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Species belonging to selected taxon:

Cynodon dactylon, Eragrostis curvula, Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042608
species: Sorghum bicolor
miRNA family: MIR437
source: miRBase, original name: sbi-MIR437i (MI0010909)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAAGTTAGAGAAGTTTGACTT

miRNA*
GTCAAACTTCTTTAACTTTGA

mismatches: 2
bulges: 0

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pre-miRNA
GTCAAACTTCTTTAACTTTGACCAAGTTTCTAGAAAGTTATATTAACATCTTCAGTACCAAATAAATGTACTATCAAGACATTTGATGGTGGATCTAACA
AAACTAATTGATGGTGTAGATAATGGTGCATTTTTCTATAAACTTTGTCAAAGTTAGAGAAGTTTGACTT


dot-bracket secondary structure
((((((((((((((((((((((.((((((.((((((((((...)))).......((((((......(((((((((((....((((.(((.....))).))
)).....))))))))))).....))))))...)))))).)))))).))))))))))))))))))))))..



SIMILARITIES
miRBase sbi-MIR437f: 3e-27

PMRD sbi-miR437i: 2e-93

microPC miR437: 0.0000000000006
UniProt no hits

RFAM no hits

Identical with: sbi-miR437i from PMRD (MNEST054505)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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